rs49959848 SNP Detail

Summary

• ID
  rs49959848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69691642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTTCCCCC TTGTAAGTGG TACGACCCCC CGCTTAAGTC
  CCTGTGCAGG TCTTCAGCTT GAACTATGTG TGAGTTCCTA CTGGCTGAGG GTCCCCGGAG
  Y
  CTGTGGGACT GGATTTCCGA GTCACACAGG AGTAATGGGA GGGGGTGCCC AGCACCCTTC
  TCGAAGCGCA GGTCACAGAA GGAGGGCGTA CGGAGGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss132361404	ENSMUSSNP901227	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323731585	CHEV_11_69614318	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49959848					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69691642 () rs orientation: forward

Symbol	Name	Function Class
6720407P12Rik	RIKEN cDNA 6720407P12 gene	1310 bp downstream
Cpgi3148	CpG island 3148	within coordinates
Cpgi3149	CpG island 3149	1782 bp proximal
Fgf11	fibroblast growth factor 11	within coordinates
Rr450111	regulatory region 450111	890 bp proximal
Tssr102534	transcription start site region 102534	21 bp downstream
Tssr108840	transcription start site region 108840	850 bp upstream