rs49960450 SNP Detail

Summary

• ID
  rs49960450
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:161817159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCTAGC CAATCTGCAT
  GCGTAAGTTA GCATGTGACA GGAAAGCTGG CTTTTACTTA TCAACCATGT ACCTTTTCAA
  ATCCTAAAAA CACTTTTTAA AGTTATTATT ATGCTAGACA AGATAAAACT ACATCTATTG
  CGCTGACAAC CTTGGTGTCC TCAACCAGGA GGTTGACTGA GAGATTAGAA ACTGAGTGCG
  W
  AGCGAAGGTC CTTCAAGCTT ACATTCCCGT CCTGAGGCCT GACGTGCACT CCGCACACGC
  CAGTGAAACC TCAGGCTTCG TTCATGTTGG TGTCTGCTGT TAGCAGAGTG CAAACCCTCT
  GAACTGCAGC AATCTGAAAA TATTCTGGGG TGCCAGTGTT GAACTTCTGG GGAGGGGGTG
  GTGGAGTAAG GGATTATAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60335036	NES15839135	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49960450					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335036	NES15839135	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161817159 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnm3	dynamin 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Gm38304	predicted gene, 38304			within coordinates
Rr372345	regulatory region 372345			892 bp upstream
Rr421884	regulatory region 421884			1003 bp proximal