rs49961099 SNP Detail

Summary

• ID
  rs49961099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:52316592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCAATATA TGCAAGAGCA ATGGTGCCAA TTATATGACT
  TATGGAATCC TTCATCTGAA TTTATTTTTC TCATTTTTTA AGCAGGTTAA ACATGAAAGG
  Y
  TGGGGCTGGT GAGATGGCTC AGTGGGTAAG AGCACCCGAC TGCTCTTCCA AAGGTCTGAA
  GTTCAAATCC CAGCAACCAC ATGGTGGCTC ACAACCATCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52719783	NES15554366	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49961099					SNP	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52719783	NES15554366	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52316592 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpc	heterogeneous nuclear ribonucleoprotein C	Intron
Rr491873	regulatory region 491873	111 bp proximal
Rr491874	regulatory region 491874	491 bp proximal
Tssr128488	transcription start site region 128488	1100 bp upstream
Tssr128489	transcription start site region 128489	391 bp downstream
Tssr128490	transcription start site region 128490	1058 bp downstream