rs49963740 SNP Detail

Summary

• ID
  rs49963740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84131516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTGTGT CCCTTCCTGT
  GTGTCCCTTC CTGTGTGCAG GGTCTAGGAG AGGTCACCCT AACTCTCAGC AATCTGTCCC
  CAGGGTTGAA TGCTCTGCTC TGTCTCACCA ACCACATCCT GAGAGCGTGG TGGTTTCAGG
  AAGCCATGCC CCCAAATATG TGCCTCTGAC TTTGTGCCAT CTAGGCTTTG GGTGAGAGCA
  R
  CAGGCGCACC TCGCCCCATT AGTCACGCAC AGGGCCACTC TGGCCAGCGC TGAACCCTGG
  GAACCCACAC TAGGGTGCTT GGGAAAGCAA GGAGAGGACT GATGTGCCCC GGCCCAGGAC
  TGATATGTGA CTGAGCACAC TGCCTCGGTT ACTCTGCTGA GGCAATTTTA GGGAAAAGCA
  CACACGAAAC CCTCCCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60283481	NES15790219	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs49963740					SNP	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60283481	NES15790219	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84131516 () rs orientation: forward

Symbol	Name	Function Class
Gm41637	predicted gene, 41637	1438 bp downstream
Rr531870	regulatory region 531870	within coordinates