rs49964415 SNP Detail

Summary

• ID
  rs49964415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21424490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCACATTTT TTTGGGGGGC ATGTTAGCTA AACTAGTCTG
  TACAACCGAG GTATAAACAC TTTCACTAGG TACACATTCA AGGAATACCT AACCAAAAAA
  R
  AAAGTCACCC CCACAAATTA GATGCCAGCT TTTTTTTGTT TTGTTTTGTT TTGTTTTGTT
  TTGTTTTGTT TTTTTCGAGA CAGGGTTTCT CTGTATAACC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52314529	NES15371808	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49964415					SNP	G	A	A	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314529	NES15371808	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21424490 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	857 bp upstream
Cpgi4477	CpG island 4477	282 bp distal
Gm49586	predicted gene, 49586	143 bp downstream
Rr463712	regulatory region 463712	1050 bp distal
Rr463713	regulatory region 463713	806 bp distal
Rr463714	regulatory region 463714	925 bp distal
Rr463715	regulatory region 463715	within coordinates
Rr463716	regulatory region 463716	745 bp distal
Rr463717	regulatory region 463717	257 bp distal
Tssr112932	transcription start site region 112932	710 bp downstream
Tssr112933	transcription start site region 112933	232 bp downstream
Tssr115856	transcription start site region 115856	997 bp upstream
Tssr115857	transcription start site region 115857	971 bp upstream
Tssr115858	transcription start site region 115858	943 bp upstream
Tssr115859	transcription start site region 115859	897 bp upstream
Tssr115860	transcription start site region 115860	872 bp upstream