rs49964973 SNP Detail

Summary

• ID
  rs49964973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80060847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAACAGG AAAAGACATG
  GGAAAATGCA CTAGCAATGG GGGTCAAGGC CTCTGTTCCT GGGTGCCCGA CCCTGGCACA
  TCTGTTCACT GAAGCTGAGG AAGAAGAGAG TTCATAGTGA GTGGGTTAAA CAGGGACCAA
  GTTAACTGGT TCATGGGTAA GTGAGTTAGT AATGAATGGA TCAACTGGCA AGTTGGTTAA
  R
  CCATGAAGAG GTTACTAAAT GGATGGGTTG ATTAGTAAAC GGCTAAACTG ATGAATGGGT
  TGGTTAACTG GTGACTGGGT TTAACTAATT CCTTACATTA CCATCTTTTG CTCACTGCTT
  CTGCTTCAAT TGTGAACCTA TAGAACCAAC CTTGCTGAGA GACCTGGCCA TCCCATGCAT
  CCCACGGACA CGCTCACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss61291333	NES16897202	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs49964973					SNP	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291333	NES16897202	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80060847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1860	CpG island 1860	1183 bp proximal
Pwwp3a	PWWP domain containing 3A, DNA repair factor	1421 bp upstream
Rr402040	regulatory region 402040	1278 bp upstream
Rr435156	regulatory region 435156	931 bp proximal
Rr435157	regulatory region 435157	1432 bp proximal
Rr435158	regulatory region 435158	1546 bp proximal
Tssr94522	transcription start site region 94522	1631 bp upstream
Tssr94523	transcription start site region 94523	1742 bp upstream
Tssr94524	transcription start site region 94524	1752 bp upstream
Tssr94525	transcription start site region 94525	1779 bp upstream