rs49965693 SNP Detail

Summary

• ID
  rs49965693
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40348124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCT GCTAAGCAAC ATTGCTGGAC
  K
  CCCCCCAGTG TCCACCAGCT CAGAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136329994	ENSMUSSNP1758161	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322916127	CHEV_9_40244413	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49965693					SNP	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40348124 () rs orientation: forward

Symbol	Name	Function Class
Gm51668	predicted gene, 51668	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676832	regulatory region 676832	1067 bp proximal
Rr676833	regulatory region 676833	1728 bp proximal
Tssr88924	transcription start site region 88924	1767 bp upstream
Tssr88925	transcription start site region 88925	1722 bp upstream
Tssr88926	transcription start site region 88926	1675 bp upstream
Tssr88927	transcription start site region 88927	1657 bp upstream
Tssr88928	transcription start site region 88928	1586 bp upstream
Tssr88929	transcription start site region 88929	362 bp downstream
Tssr88930	transcription start site region 88930	417 bp downstream
Tssr88931	transcription start site region 88931	436 bp downstream