rs49966120 SNP Detail

Summary

• ID
  rs49966120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103253024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGTGCAG CTGGTGGGCA
  GAACCCAGGT CATACAGGCC TGGGGCTTCC CGTTCTCTCT GGGGAATGAG TGGCCAGGCT
  GAGGTTCCAG GTCTGTTTGC CAATGTGGCC TGGTTAGGGT CCTGGGCAAT TCCTGACTTG
  TCCTAAGTCA GGGATAAATA GGTTTCTAAG CCCAGGTCTG CAGCTGACCC AAATGCCACC
  Y
  TGGGTCTGCT AGCATAGGTT CTTAGAATCC GAGACTGGGC TCCAGATCAA CCCTAGGCCC
  CAGACTGGGT CTGGCTCCAT TCTCTTTCTG ACTTCCATGG ATCTGGGTCT GGGCCAGCAT
  CGACCTTTGT TTGGGATTTG TCCTGAGCTG GTCCTGCAGC ACCATCCACG GTTAGTGTTC
  TTCATTGGCC TTCCAGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52584130	NES15645636	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49966120					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52584130	NES15645636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103253024 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	within coordinates
Rr404654	regulatory region 404654	1828 bp downstream
Rr510620	regulatory region 510620	1563 bp distal
Rr510621	regulatory region 510621	1975 bp distal
Rr510622	regulatory region 510622	988 bp distal
Tssr136772	transcription start site region 136772	23 bp upstream
Tssr136773	transcription start site region 136773	41 bp downstream
Tssr136774	transcription start site region 136774	115 bp downstream
Tssr136775	transcription start site region 136775	133 bp downstream
Tssr136776	transcription start site region 136776	177 bp downstream
Tssr136777	transcription start site region 136777	209 bp downstream