rs49966761 SNP Detail

Summary

• ID
  rs49966761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106487205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTGCTT CCTTTTTCTT
  TTTGTAACAT TTTTTATTTT ATTTTATTTT ATTTTTTTTT TTTTTGAGAC AGAGTTTCTC
  TGTGTAGCCT TGGCTGTCTT GGCACTCACT TTGTAGCCCA GGCTGGCCTC AAACTCAGAA
  ATCTGCCTGC CTCTGCCTCC CAAGTACTGG GATTAAAGGC GTGTGCCACC ACTGACCAGC
  Y
  TTTCTTGTAA CATTATTAAC CATCATAGTT GTTCTAATCA AAGCTTGTTT ATTCACCAAT
  TACCCATATT GTGCCAACAT TTTTCTCCTG AGTACTTCTA ACCCTCATTT TTCCCTGTGG
  GCTACGAGTC ACACCCTAGT TAGCACCTTT ATCTTTGTAG TCTTACCTCA TGGTTGACAT
  CAGCATAATT TACTGTATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60659106	NES16259853	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49966761					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60659106	NES16259853	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106487205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20952	CpG island 20952	1745 bp distal
Gfod2	glucose-fructose oxidoreductase domain containing 2	1906 bp upstream
Rr185898	regulatory region 185898	1004 bp distal
Rr401096	regulatory region 401096	1743 bp downstream
Tssr82689	transcription start site region 82689	1916 bp upstream