rs49966814 SNP Detail

Summary

• ID
  rs49966814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCCGTT CCTCTTCCTC
  CTCCTCCTCC TCCTCTTCTT CTTCGGCCTC CCGTGCCCTT CCAGCCCAGG ACCCACCCAT
  GGAGAAGGCT TTGAGCATGT TTTCAGACGA CTTTGGCAGT TTTATGCTGC CCCACTCGGA
  GCCCCTGGCC TTCCCAGGCA AGTGCTGGGG CTCTGAGGGG AGGGGAGGGC CACAGGTGGG
  R
  GACATCTGCT CCAGGCCATC GCCGAGCATG CTGTGGCCAC CCACCTGCCA GACATAGGTG
  CCGCATGGGT CACAGCCATA TGTGGCTGTC AAGGTAGACC TGGCCACCAA GACAGATGTG
  GCTACGATAT AGGTGGGCTA CCTGGGACCC TAGGGGTGAG ATGTGAATCA AATAGTCTCA
  TATGGCCAGT GTCATAGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147735998	ENSMUSSNP549673	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49966814					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	184 bp distal
Gm70184	predicted gene, 70184	965 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40052	transcription start site region 40052	1787 bp downstream
Tssr40053	transcription start site region 40053	1226 bp downstream
Tssr40054	transcription start site region 40054	348 bp downstream
Tssr40055	transcription start site region 40055	335 bp downstream
Tssr40056	transcription start site region 40056	314 bp downstream
Tssr40057	transcription start site region 40057	253 bp downstream
Tssr40058	transcription start site region 40058	226 bp downstream
Tssr40059	transcription start site region 40059	202 bp downstream
Tssr40060	transcription start site region 40060	142 bp downstream
Tssr40061	transcription start site region 40061	132 bp downstream
Tssr40062	transcription start site region 40062	484 bp upstream
Tssr40063	transcription start site region 40063	1972 bp upstream
Tssr44314	transcription start site region 44314	599 bp downstream