rs49968889 SNP Detail

Summary

• ID
  rs49968889
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76345591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGACCT GACTCAGCTC
  CAGACTTCTC CTCCCTGAGT CAGGGCTGTC ACTGACTAAA GTCCCATTGT CAGTGGCTCC
  TTCTGAGGAA CCCAGTATGC TTCCTGGGGA ATTGAAAATT TTATTCCCAA TGCTTTCAGA
  ACTCAAAAGA AGTGTTAGAG ATAAACGTGA GTCCAATCTG TGGCTCCCCT AGAATCTCAC
  M
  AATCATCTAT TGTCTCCAAA GCCTGCTTCC GTCTTCTCTC CAGCACTTCC TTGTGCATTC
  TGACCCACAT AAACTTTGAC TCAAGGAGGA TGACTTCACA GTGGACTGAT CCATCTGCCC
  TCCGGTTTCC CAGAAGATTA GGATCAGGCT GCAGCTGAAA TTGTGCTTCA GGTAACTTGA
  AGTCATCATT TTGCTGACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148381291	ENSMUSSNP1664792	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49968889					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76345591 () rs orientation: forward

Symbol	Name	Function Class
Gm30726	predicted gene, 30726	92 bp upstream
Rr370111	regulatory region 370111	913 bp upstream
Rr518205	regulatory region 518205	956 bp proximal
Tssr139022	transcription start site region 139022	40 bp upstream