rs49969149 SNP Detail

Summary

• ID
  rs49969149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:75828565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTCCTGA GCTAACCTAT
  CAGTGGTGTG AAGACATCTT TACTGCCCAG AGGCAAACTG TGATGCCGCC AGAAGGCATT
  TGCATCTTAA TGTGTACTGA AAGACCTAAG GACTGTAAAG GATCAAAAGA ATCTCTGGGG
  TCCCCTGATG GGATTTCTTT GTTTGCATGA GAGGAAGGGG GCAGCCACCC GGGCGTCCTT
  Y
  CTTAGTCACT CTACATTGGT AGCTACTTCA TTTTTTAAAA TCAGGGCCAG ACGCTCCTAC
  TCAGAGGACA TGTTGACCAT AATGCATTGT GAACAGTGTT CCCTCTCCTG AGGCCATTGG
  CCTATCCTTT TCAGCATCAC TGTATTAAGT AAACAGCAAG CACCTAGACT AATCCATTAC
  CAAGGTAGAG TTTTTCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss62906306	NES17396579	PERLEGEN	MM_PANEL2	f	SNP		T	T	C	T	T	T	T	T
ss145965572	ENSMUSSNP5574286	ENSEMBL	ENSEMBL_Sanger	f	SNP	T				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs49969149					SNP	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62906306	NES17396579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:75828565 () rs orientation: forward

Symbol	Name	Function Class
Rasgrp3	RAS, guanyl releasing protein 3	within coordinates
Rr531054	regulatory region 531054	1119 bp proximal
Tssr145886	transcription start site region 145886	943 bp downstream