rs49971543 SNP Detail

Summary

• ID
  rs49971543
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:83402850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTGCAAT GATGCACAGA
  CAAAATGCGG GAGACGGGGG AAAAGTATGG CATGGCTCTT ATTTTTAAAA CCACTATTCC
  AGACCTAAAA CAGTTGGTTC AAATTGAAGG AATCAGCTAC ACTTTTATAA TTCATTTCTT
  TAATGAGAGT TATAGTTTCT ATAATCAGCT GAAAAATGTT CTGGCAGAAT TCTTTCTCTC
  K
  TAGCATTGAG TTTAAATATT AAATATTCAT GCTTACTCTA TAACTCCAAA TTCATTCTAA
  AATAATTCTT TTCAAATCTT ATAGGTATTG TTTGTTTTCT ACTCTTTTAA TATTTAATAA
  AAAATACCAA CTGTGTAGCT ATGTATGTTC CCACAGCATT GTGAACCTTG TGGGTTAGCC
  CAACAGATAT TACTGATGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60760707	NES16400812	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49971543					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60760707	NES16400812	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:83402850 () rs orientation: forward

Symbol	Name	Function Class
Gm37989	predicted gene, 37989	1467 bp downstream
Gm69621	predicted gene, 69621	1131 bp downstream