rs49973296 SNP Detail

Summary

• ID
  rs49973296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:39296653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTTTT AGGTGAGTTG
  AGTCCATTGA TATTGAGAGA TATTAAAGGC AGATGATTGT TAGTTCCTGT TATGTTTATT
  GTTGTAGGTG GCATCATCTG CATGTGATTC TCTCATTTTG GTTTTGTTAT GAGATGATTA
  ATACCTTGTT TTTTATTTGG TGTATATACT ATTATATGTA TTGTGGCACA TAATTAATTC
  Y
  AAGCTCTAGG GAGGTAAAGA CAGGTGGACA TCTGGTAGAG GCAGGTGGAT ATCTGTGAGT
  TCCAATTTGG TCTTTGAGTT CTTGCAGATG CAGGGCTATG TAGAGAGAGC CTAACCCCAA
  AACAAAACAA AAACCGAAGA GGAAATAGAC ACATACATAC AAACATACAT ACATACAGAG
  AGAGAGAGAG AGAGAGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147663759	ENSMUSSNP1518982	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49973296					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39296653 () rs orientation: forward

Symbol	Name	Function Class
Rims2	regulating synaptic membrane exocytosis 2	within coordinates
Tssr131153	transcription start site region 131153	1040 bp upstream
Tssr131154	transcription start site region 131154	1066 bp upstream
Tssr131155	transcription start site region 131155	1094 bp upstream
Tssr131156	transcription start site region 131156	1310 bp upstream