rs49973368 SNP Detail

Summary

• ID
  rs49973368
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27835846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGTGGG TAGCACCATC
  CCTAGGCACC AGGGCCTGGT CTATATAAGA GAACTAAAGA GTGAGCCAGT GAGCCAACCA
  GCAAGCAGTT ATTCCTCATT ATTTCTGCTT CAAGCCTGGC TTCCCTCACA GATGAGTTGT
  AATTTTCTCC CCCAAAGTTG CATCTGACAA ATGCGCTGTG TCACAGCAGC AGAAAGGAAA
  M
  TAGCCCACTG CTACCCAGTG ATGGTGGTTT AAAGAGGCTG GCAGCCCTCT GCCGGATTTG
  TCACCGTTTT GGTGCTTGTA GGTCTTGACT GGTTCTGCCC ATAGCCTCCT GACTCTTGCT
  TCCTCATGTC ATGAACATGA ATCCCACTGT TTCACTGGCT TCCTACAGCT GCCCCTTGCT
  GCCACCAACC CTGCCAGGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148632116	ENSMUSSNP4756161	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49973368					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27835846 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	1310 bp proximal
Rr644171	regulatory region 644171	1391 bp proximal
Tssr65385	transcription start site region 65385	1363 bp downstream
Tssr65386	transcription start site region 65386	683 bp upstream
Tssr65387	transcription start site region 65387	1012 bp upstream
Tssr65388	transcription start site region 65388	1109 bp upstream
Tssr65389	transcription start site region 65389	1165 bp upstream
Tssr71448	transcription start site region 71448	677 bp downstream
Tssr71449	transcription start site region 71449	687 bp downstream
Tssr71450	transcription start site region 71450	704 bp downstream
Tssr71451	transcription start site region 71451	1097 bp downstream