rs49975646 SNP Detail

Summary

• ID
  rs49975646
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84849931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTTGGCTAAT CTTTGCTATT TTATGTCTTT AAAAGAGATT
  GTGTGTTTCA TTCAAGTTGT CCAATTATTT TTTGCTCATA ATATTCTGTT ATTTCCACAC
  M
  CCCCCCCAAG TTCTGTGATT CTACATTTTG GTCTTCTGTA GGCTTAAATT TTTTAAAACT
  TAACTTTTAA TAAGGGTTTT CAAGCATTTT GACTCCCCTG C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146139069	ENSMUSSNP1800444	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49975646					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84849931 () rs orientation: forward

Symbol	Name	Function Class
4930500A05Rik	RIKEN cDNA 4930500A05 gene	49 bp downstream
Plekhh2	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	within coordinates
Tssr149687	transcription start site region 149687	744 bp downstream
Tssr149688	transcription start site region 149688	759 bp downstream