rs49976134 SNP Detail

Summary

• ID
  rs49976134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136508549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGGGAAA TGTATTATAT ATAAATAAAT
  GTAGAGTGGT GCTGAGAAAA ACCTGGAAGC GGGTCTGGGA GTGGGTAAGA GCACTCGCTA
  TAGCTTGAGG GCTGGAGTCC ATATTCCCAA GACCCATTTT TAGAAGCTGG ACATGTTTAG
  R
  TGCATCTATA AAACACCCCT CCAAGTGCTT GAGAGAGTGA GGGGCTGGAA GACAGCAGCA
  Tagctccagg ttcttcgagc aactttgtct caagagcaaa taagagagag tgattcagca
  gtggacttga cttcttcctc tggcctccta                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145558985	ENSMUSSNP5958783	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319996193	CHEV_1_138477388	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49976134					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136508549 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm33994	predicted gene, 33994	232 bp upstream
Gm57131	predicted gene, 57131	within coordinates
Rr367011	regulatory region 367011	1098 bp downstream
Rr419472	regulatory region 419472	1345 bp distal
Rr419473	regulatory region 419473	1133 bp distal
Rr419474	regulatory region 419474	1116 bp proximal
Tssr9072	transcription start site region 9072	1160 bp downstream
Tssr9073	transcription start site region 9073	1138 bp downstream
Tssr13942	transcription start site region 13942	264 bp upstream
Tssr13943	transcription start site region 13943	249 bp upstream
Tssr13944	transcription start site region 13944	222 bp upstream