rs49976857 SNP Detail

Summary

• ID
  rs49976857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76544525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTGAATT TTGTTGGAAC
  TAGGATAAAA CTGATTGGAT CTAGTTGGGT CTCGAGTTAT CTTTTTGGGC AAGCCATCAA
  CCCTAAGTGT CTCTCCATTG TGTGCTGCAG GGTGCTGTGT TCCTCAGTGC TACAGCTTCC
  TGATATGGGA AGGCCTGTAG GCCTCTGTGT TCTTCCTCTT AGAAACAGAT GGGCAGTGTC
  Y
  ATGGGCCAGG GCAGCTTCTC CTCTGCCCTG TGGTATGTCT GGCATTGACT TCTCTTTCCA
  AGTGTGTTGG GTAATGTGTT TGTAGATAAA GAGGCACGGA GAAAAATGGA AACCTTTATT
  AGCAGAGATA GCTGGCTTGG ATCAGATTAC GGGGAATGTG GGGGAGCCAT GAAGAAACTA
  ACTAAAGGGG AGCCTTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61288986	NES16903928	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49976857					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288986	NES16903928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76544525 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	101 bp downstream
Tssr98195	transcription start site region 98195	411 bp downstream
Tssr98196	transcription start site region 98196	607 bp downstream
Tssr98197	transcription start site region 98197	800 bp downstream
Tssr98198	transcription start site region 98198	844 bp downstream
Tssr98199	transcription start site region 98199	951 bp downstream
Tssr98200	transcription start site region 98200	992 bp downstream