rs49977083 SNP Detail

Summary

• ID
  rs49977083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52654307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTTCTC TTTCCTTCAC
  ACCACTGAGT ACCGTTAAGT CAATACTTTT TTCAATGGGT TATGAAGGAA AAAGACTTTA
  AGTCTATCAT TTCACAACCA CACTTCTGAG TTGTCTTTCT GCCATAGCAG GATAGTACAC
  ACTGATTGGT AGAAAGTCAA CTTGGCTGTA GTTCTTTTTA TTCACAGGAA AGGAACATCC
  Y
  GTGCTCTGAC ACTCTTTAAA AGCAAGAACA AGAAAAATGT AACATCCACC GCAAGTTATT
  TCCTGTTCAG GAATTTTGCT CTCATTTAAA AGAGAAGCGA CTCAACCCAA ATCCTTACAT
  CCTCCTTGGC AGGAAGAGCT GAGTCATCAC CGCACCTATG ATGGATGTGC TTCATCTCCT
  CTGACATGGA TAAGCTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52423929	NES15399048	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	T	T	T		C	T	T		C
ss137738405	ENSMUSSNP1278650	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss324040184	CHEV_12_53708511	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49977083					SNP	T	T	C	C	C	T	C	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423929	NES15399048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52654307 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Gm59577	predicted gene, 59577	1715 bp upstream
Rr466028	regulatory region 466028	1864 bp distal
Tssr113445	transcription start site region 113445	114 bp upstream