rs49978265 SNP Detail

Summary

• ID
  rs49978265
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:4018905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGGAAA GGGGATAACA
  TTTGAAATGT AAATAAAAAA AAATATTTTA AAAAAATAGA GTCAAAGCAG TCAAAATTCC
  TTAAAGTAGG TCTAATTCTC TGTTTTAGTT TGAAAAAGAA ACAGAATTGC TGAGATCAAT
  AATAAATACA GGTTAATATA AAGCTATTAT TTCATCTGTT ATCTAATATT TGATGAATCA
  M
  CTTTTACAGT GTCTCAATTT TAAAGCATTT TAAAGTTTTC AGGGTCTTGA CCTTATGTAG
  GAAGAATAGA TATTATTACT GCAAGTTTCC TAATATGAAA TCTGTTGCCA ACTGGAATAA
  AATTACTTCT TACATATTGC TGTGGCTAAA AAGAAGTAAA TTCATACTTC AAAGTCACAT
  TCTTTGTTAC TAAGCCAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60679942	NES16238498	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49978265					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60679942	NES16238498	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:4018905 () rs orientation: forward

Symbol	Name	Function Class
Rr382823	regulatory region 382823	879 bp upstream