rs49979000 SNP Detail

Summary

• ID
  rs49979000
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7356052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAGTCA CGAGCCTCAG
  TGTTTGCACA GGTGATACAA GACAAACCAG AATATGCTAA GGTAGTAGAG CCTCTATGTT
  TTCTTGAATA TTGAAAATTC AACACACAGT TTCAACTAAA AGCCACATAC TTGTGACATA
  AATTGGCCTG CCAAATTTAG TCTTGTTTGA GAAACAGGAC TTGTGATTTT ACCAAATAAG
  K
  TTTTTTTGGA GAGGTGAAAA CAGGTGTAAT TTATTGTAAT CTGACACTCT TTTTTTATTA
  GATATTTTCT TCATTTACAT TTCAAATGCT ACCCTGAAAT TCCCCCACTT CCTCCCCCTG
  TTCTGCTCCC CAACCCACCC ACTCCAGCTT CCTGGCCCTG GCATTCCCCT GTACTGGGGC
  ATATGATCTT CCAAGGGCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60680450	NES16229707	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49979000					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60680450	NES16229707	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7356052 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83726	transcription start site region 83726	1924 bp downstream
Tssr83727	transcription start site region 83727	1254 bp downstream
Tssr83728	transcription start site region 83728	1229 bp downstream
Tssr83729	transcription start site region 83729	1220 bp downstream
Tssr83730	transcription start site region 83730	738 bp downstream
Tssr83731	transcription start site region 83731	694 bp downstream
Tssr83732	transcription start site region 83732	661 bp downstream
Tssr83733	transcription start site region 83733	613 bp downstream
Tssr83734	transcription start site region 83734	217 bp downstream
Tssr83735	transcription start site region 83735	195 bp downstream
Tssr83736	transcription start site region 83736	1749 bp upstream
Tssr83737	transcription start site region 83737	1812 bp upstream
Tssr88070	transcription start site region 88070	1274 bp upstream
Tssr88071	transcription start site region 88071	626 bp upstream