rs49979079 SNP Detail

Summary

• ID
  rs49979079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34932905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGACCA CGCTGATCAC
  ATGATCCTAG GAGAATTTCG TTTCACCATA AACAGGCATC CAACAGGCAA GTACTCCAAA
  CCCCAGGACT GATAGAGAGG AGCTAGAACT TAGCCCCAAG AAGACTCGAG AGTGCTTTCC
  AATAAAGCCT TCAGTAACTG GATGCAGCTG AATAGACCTG ATGCCTTTGT AAAGTGTGGG
  R
  CTATCCCTCA CATTTTCGTT GGCAGTGTCA ACCAAAAAAA AAAAAAAAAA AAAAAAAAAC
  CAAGTTGCAA AGGGCAGGAA CTGATCAAAA CAAACAAACA AACAAACAAC ACACCCAGAC
  CCGTAGGAGA AGCAGAAAGA ATTGCCTCCC GGACAAGCAA ATTGTCAACT TAACCGTAGT
  GGTCAAGTCG AAATCAGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148805364	ENSMUSSNP223189	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49979079					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34932905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	1079 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	1869 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	1290 bp downstream
Rr645337	regulatory region 645337	95 bp distal
Rr645338	regulatory region 645338	275 bp proximal
Rr645339	regulatory region 645339	1151 bp proximal
Rr645340	regulatory region 645340	1213 bp proximal
Rr645341	regulatory region 645341	1880 bp proximal