rs49979594 SNP Detail

Summary

• ID
  rs49979594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:52691207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTGGCC CACATTGTGG
  CAAAGGAGCT ACTTCTGCAT GTGTGTTTCC TCTGTTCTTG GGATGTCATC TCAGGCAAAG
  TGCCTCTCTT TGGCAGAGGG CAATGCCTAG GGAAGGGACA GGAGCAGCTT ATTCTGCACA
  AATGTCCTAT GCTGGGGCCA GTGTGCTCAG TTTTGAGTGG CATATGTTGT GTCCGTGACA
  R
  TTCTCAAGGT TGGTTTGTAG AGGACAGTGG CTACAGCCAA ATGGTTTCTG GGGTGAGTCT
  CTTTGCTGAG AATAAAGGGG GCTAGCCCTA ATTCTGTATT TTTAATTATC CCCTTGGGCT
  CAGTCCAACC ACACTGGATG CTTTTAAGTC TAATGAGGGT TCTGGATGCC TTATCCTGAT
  CCCCCTTGGA TATTATGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61797339	NES17724057	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49979594					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61797339	NES17724057	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:52691207 () rs orientation: forward

Symbol	Name	Function Class
Rr272474	regulatory region 272474	1007 bp distal
Rr272475	regulatory region 272475	1594 bp proximal
Rr284094	regulatory region 284094	1097 bp distal
Rr284095	regulatory region 284095	1995 bp proximal