rs49979967 SNP Detail

Summary

• ID
  rs49979967
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:109220269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCATGACC TTACTCTAGG CCCAGAGTGT CCCCTCTCAG
  CTCCCAGCTG ACCAAGGCAC AGCGCTGAGC ACATCGAAGA ACCCAGGCAG GAACCAAAAG
  T
  TTCCTTTCTG CCCCATGCTC ACAGCTGCAT CCAGATTAGC TGTCACTCTC TGTAAACCCT
  CAAGGACTGG AATTTTCCTA TAAACCAGAG AGGGCTCCC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323845212	CHEV_11_109190757	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49979967					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:109220269 () rs orientation: forward

Symbol	Name	Function Class
D11Mit181	DNA segment, Chr 11, Massachusetts Institute of Technology 181	968 bp distal
Gm72366	predicted gene, 72366	within coordinates
Rr238866	regulatory region 238866	1269 bp distal
Rr248322	regulatory region 248322	69 bp distal
Rr369414	regulatory region 369414	1896 bp upstream