rs49980788 SNP Detail

Summary

• ID
  rs49980788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:52750354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGAGCTA AACTGAAGTG
  CCCATTACTT CCCACGGTGG CCTTATTTGC TTTGTTCTTT GTCGGTGGAA TGAATGCTTG
  TGATTCTCTA GCTTGATAAA TTGCAGAAAT ATACTGCATC CTCATGTCTT CCATCACTGG
  GGTTTGTGTT TGGTCCCCAG TAATTAAACT CAACAACTTG GACCCTTTAA CCATTATCTT
  Y
  CCTTCACACC CAGGCTCAAG CTGATGCCAA CCTCCGTTCT ACTCAAATGA CTGATAAGTT
  TAAAGAAATA AAATATTACA TATCACTATT CATCAAGGAA ATGCAGGTCA AATTCATCTC
  TAGTCAAAAG CCACCTCACA TGAATTAGAA TGGCATTTAC CAAAAAAAAA TTTTTTTAAA
  GAGGAACTGG CAAAGGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63131382	NES17435776	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49980788					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63131382	NES17435776	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:52750354 () rs orientation: forward

Symbol	Name	Function Class
Rr354446	regulatory region 354446	within coordinates
Tssr151055	transcription start site region 151055	1286 bp downstream
Tssr151056	transcription start site region 151056	1249 bp downstream
Zfp474	zinc finger protein 474	within coordinates