rs49981406 SNP Detail

Summary

• ID
  rs49981406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190804515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATAAATCA AAATTTCAAA ATTCTGAAAG AATTATTGTT
  TGAATTTCAG GCCTTCCTCT GGGTTGACTT CTTTTTTTTT TTGTTTTGTT TTGTTTTTTC
  R
  AGACAGGGTT TCTCTGTGTC CTGGCTGTCC TAGAACTCAC TTTGTAGACC AGGCTGGCCT
  CGAACTCAGA AATCTGCCTG CCTCTGCCTC CCAAGTGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146501492	ENSMUSSNP2652895	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320194690	CHEV_1_192896197	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49981406					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190804515 () rs orientation: forward

Symbol	Name	Function Class
Nsl1	NSL1, MIS12 kinetochore complex component	Intron
Rr426040	regulatory region 426040	158 bp distal
Rr426041	regulatory region 426041	50 bp proximal