rs49981825 SNP Detail

Summary

• ID
  rs49981825
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156977735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCAAATA GACAGTATTT TTACTAATTA CTAGTCAGTG
  TCCAAATAGC AGGCTTTCTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTGG CGTTAAGCCA
  W
  TTTGGGACAG ACCCCAAACT TCCCCATAAA TCTTTATCCA CCCATTACTA GTACAACGAC
  CACTAATTTA CGACACCTCT TCAGAAACCA AGACACATA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584432	CHEV_2_156961551	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49981825					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156977735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12569	CpG island 12569	357 bp distal
Rr397438	regulatory region 397438	468 bp downstream
Rr568443	regulatory region 568443	60 bp distal
Samhd1	SAM domain and HD domain, 1	719 bp upstream
Tssr21224	transcription start site region 21224	1328 bp downstream
Tssr21225	transcription start site region 21225	9 bp downstream
Tssr27158	transcription start site region 27158	1841 bp upstream
Tssr27159	transcription start site region 27159	1672 bp upstream
Tssr27160	transcription start site region 27160	705 bp upstream
Tssr27161	transcription start site region 27161	681 bp upstream
Tssr27162	transcription start site region 27162	600 bp upstream