rs49983538 SNP Detail

Summary

• ID
  rs49983538
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127202016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAAGCAG AAAAGAGAAT
  CCGTTTGCTG GGAAACAGAG TGAGAACTCC ATCATTTTTC CTCTGCTGTC TGTGTTCTGC
  CAGCTGACGG TACCTAGTGC AAAATTTAAC CATTAAAGGG GGGCAATCTC CTAGCAACCC
  CACTGTTGGG CAAAACTAAT CAAGTGTCCA CACTACGGCT TCACCCTGCC TCTCCTCTTA
  K
  CACCTACTCC CCCAGAACAG GGAAGGGTGG CAACCACTAC ATGGTCCTTT GGCACAAACA
  CAACCTGAAT CTTAAGAAGC AGTGATGTTG ACTGAGGGAG TTCCCACCCT CTCTGCGCCC
  CTCGCTTGCC ACAGAGTAAA CAAGTCCACA CAGGGTTAAG AGAATCTAAA ATCAATTCAC
  TTTAATCGGG TCTAAAAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss135862635	ENSMUSSNP3321541	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T		G
ss320953855	CHEV_3_127111285	CHEVERUD	SCREENING_POP	f	SNP				T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49983538					SNP	G	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127202016 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	320 bp proximal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	1069 bp distal
Rr584773	regulatory region 584773	within coordinates
Rr584774	regulatory region 584774	590 bp proximal
Tssr35571	transcription start site region 35571	513 bp downstream
Tssr35572	transcription start site region 35572	570 bp downstream
Tssr35573	transcription start site region 35573	619 bp downstream
Tssr35574	transcription start site region 35574	647 bp downstream
Tssr35575	transcription start site region 35575	677 bp downstream