rs49986226 SNP Detail

Summary

• ID
  rs49986226
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37693418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTATAGC GTCCATATAA TAAATAACCA AATTCCATAG
  TATGTAAAGA CGCAAAAAGC ATTCCCAGCT TACTAAAGTC CCCCACCCCG TGACAGACAT
  G
  TGGCTAAAGC TAAAACTTCC TGATGAGTTA TGCTTATTTT ATTTCATTTA AAATGCATTG
  GTGTTTTGGA CAAAATTATA CAAACATTAC AAAGCAGGA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134809954	ENSMUSSNP5284769	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320711442	CHEV_3_37538191	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49986226					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37693418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	412 bp proximal
Gm42922	predicted gene 42922	836 bp downstream
Rr575523	regulatory region 575523	188 bp proximal
Rr575524	regulatory region 575524	822 bp proximal
Rr575525	regulatory region 575525	1507 bp proximal
Rr575526	regulatory region 575526	1615 bp proximal
Spry1	sprouty RTK signaling antagonist 1	678 bp upstream
Tssr28908	transcription start site region 28908	395 bp upstream
Tssr28909	transcription start site region 28909	636 bp upstream
Tssr28910	transcription start site region 28910	659 bp upstream
Tssr28911	transcription start site region 28911	676 bp upstream
Tssr28912	transcription start site region 28912	716 bp upstream