rs49986288 SNP Detail

Summary

• ID
  rs49986288
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148793184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAGCTCTG CCTTTCCTGG GCTCCTTGAA GGGACAAGCG
  GGCAGCTCGT GTTCCCCTTG CCCTTGTGCC TTTCTGTGGG TTCCGGAGCT TTCCTTCAAA
  S
  CCAAGATTCA GATAGAAACC AAATCCCATC AGGCTTGGGG CCAGCTTTTT CTGTAGATTT
  CAGATAAGGA GGCAGCCTGT GAATTCTTGC CAGAGAAGGC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61098061	NES16608510	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49986288					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098061	NES16608510	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148793184 () rs orientation: forward

Symbol	Name	Function Class
Gm30575	predicted gene, 30575	within coordinates
Rr587258	regulatory region 587258	542 bp distal
Rr587259	regulatory region 587259	within coordinates
Rr587260	regulatory region 587260	117 bp proximal
Rr587261	regulatory region 587261	875 bp proximal
Rr587262	regulatory region 587262	1174 bp proximal