rs49986702 SNP Detail

Summary

• ID
  rs49986702
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70347020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGGGGG CGATTAGAAG
  GTAAATATAT CCAGCAAGAT AAAATGAAAA AGAATCCCAT TTCATGGGAT TAAAAAAAAT
  TAATAACTGC TATGGAACAT TCCTAAGACA TATAGAGCTA AAATTTTTAC ATTTAAATAT
  TACTTTGGGC TCTTAATAGC CAACAAAATA AATTTATAGG CCCTATTTAA AAAAGAAAGG
  R
  GGAGGGCTGG AGAGATGGCT CAGTGGGTAA GAACACTGAC TGCTCTTCCC AAGGTCCTGA
  GTTCAAATCC CAGCAACCAC ATGGTGGCTC ACAACCACCC ATAATAAAAT CTGACGCCCT
  CTTCTGGTGC ATCTGAGGAC AGCCACACTT ATGTATAATA ATAAATAAAT CTTTAAAAAC
  AAAAGAAAGA AAGAAAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss139680824	ENSMUSSNP3764412	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49986702					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70347020 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bin3	bridging integrator 3			Intron
				Noncoding-Transcript-Variant
Rr494843	regulatory region 494843			111 bp proximal
Rr494844	regulatory region 494844			1400 bp proximal
Rr494845	regulatory region 494845			1494 bp proximal