rs49987586 SNP Detail

Summary

• ID
  rs49987586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121616929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGGCTGAG TGGTTAAAAT GCACTTGCTG TTTATACAGA
  GGACCAGGAT TCAGCTCCCA GCACCATCTA TAACTCCAAT TCCAGGGGAT CTGATACCCT
  Y
  TTCTGGCCTC TATTGACACT ACACACAGGA GGTGCACACA CAAACAAGCA GGCAAAAAAA
  AAAAAAAAAC TCAAAAATAT GAGATGGATA AAAGTCAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320906110	CHEV_3_121526198	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49987586					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121616929 () rs orientation: forward

Symbol	Name	Function Class
D3Mit347	DNA Segment, Chr 3 Massachusetts Institute of Technology 347	110 bp distal
Gm42776	predicted gene 42776	164 bp downstream
Rr584178	regulatory region 584178	1258 bp distal
Tssr31460	transcription start site region 31460	648 bp upstream