rs49987653 SNP Detail

Summary

• ID
  rs49987653
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100825757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACA ATGTGAAAGT GTAAGCTGAA
  K
  AAACCCTTTC CTCCCCAACA TGCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148928284	ENSMUSSNP4379254	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
ss321627444	CHEV_5_101106910	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49987653					SNP	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100825757 () rs orientation: forward

Symbol	Name	Function Class
Gm15777	predicted gene 15777	within coordinates
Hpse	heparanase	1593 bp downstream
Rr378347	regulatory region 378347	1625 bp upstream
Rr615545	regulatory region 615545	1945 bp proximal