rs49987879 SNP Detail

Summary

• ID
  rs49987879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83079407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAATCA AGCCAGACAG
  AACGGGCTCC TTGATAAATC AAGCTCTAGT CTCAATTAGT TCAAAATGGT ACTATATGTT
  GACTTCCATC CTATCCATAC ATTATCTACA CATAGGTAAA TAATGATCCC TGGCAATGAG
  TGTGCTGGCC CACTACATTC AGAAGTGGTC CTAAGCAATA ACCAAACCCA CTATCCCTAA
  R
  GAAAGCCAGC AGTTACCAGC AACACCGAAG TGTGGGATGT TAATTTGGGC TAATGTCCTC
  TACCCAGTCA TCATGAGTTA TAGATGTGAT AGAAAGTAAT ATGACCTCAG TAGAGGGGTG
  ACAGGAGGTG TCAGGGCTGT CTCTCCTTAA AGACACCCCA ATCGCAGTCG CGGAGAGACA
  ACCGTGGAAG GGTGATCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61658584	NES17605790	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49987879					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61658584	NES17605790	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83079407 () rs orientation: forward

Symbol	Name	Function Class
Rgs6	regulator of G-protein signaling 6	within coordinates
Rr261712	regulatory region 261712	394 bp proximal
Rr268571	regulatory region 268571	1407 bp distal