rs49988537 SNP Detail

Summary

• ID
  rs49988537
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT GCACCTTTGG CTGGTCCTTG
  K
  GCCAGGTCTT ATTGTTGTGG GACTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss62767898	NES17350347	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	G		G	T	G		T
ss325408127	CHEV_17_48488174	CHEVERUD	SCREENING_POP	f	SNP										G				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49988537					SNP	T	T	T	T	T	G	T	T	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62767898	NES17350347	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655877 () rs orientation: forward

Symbol	Name	Function Class
Rr335234	regulatory region 335234	1876 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145097	transcription start site region 145097	1318 bp downstream
Tssr145098	transcription start site region 145098	976 bp downstream
Tssr145099	transcription start site region 145099	350 bp downstream
Tssr145100	transcription start site region 145100	324 bp downstream
Tssr145101	transcription start site region 145101	283 bp downstream
Tssr145102	transcription start site region 145102	169 bp downstream
Tssr148525	transcription start site region 148525	113 bp upstream