rs49988588 SNP Detail

Summary

• ID
  rs49988588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39534997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccaggttat gtattaacct ggcaacctac
  aacagaaact agcctgcaag atgctcctgt gcaatagtgg catgaatatt ataagcgtaa
  ccaaccacta taggattaga tttaaggcct actccatggt tataactcat atctaacact
  Y
  aaaaagtagc caataaccta agactagata ggtcatgggt ctaataacct aagactagat
  aggtcatgat cctagaggag aaccgaatac cattattctg ctaaaggaag atagcaatca
  catgagtcct aatgatatac tgctattctc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148969002	ENSMUSSNP7194848	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss319695768	CHEV_1_39552761	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49988588					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39534997 () rs orientation: forward

Symbol	Name	Function Class
Rr409882	regulatory region 409882	1273 bp proximal