rs49989038 SNP Detail

Summary

• ID
  rs49989038
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56299858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTCACA AATATGGGGC
  TGGGGGGCTT CTCTGTGGAT GGCAAATAAT AAACAATGAG GGTTCTCTTT TTTTTTTTAA
  TCCTGTTTCT TCTCTCAGCC CTCCTGTCTG CAGTCCTCAG CAATAACTTA GCCCTTGTCT
  TCCTCTCTGG GGGATTTAAA TGGAATGACC TTAATTCTTG CTTTGTTTGC ACTCTCTCTT
  M
  TAAGAAGCTG CAGTGAAGAC CAAGACAAAC AGTAGATTAA CAGTGGTACC TTTTATATGG
  CTGATTCGTT TCAAAAATAT GCTGAAAGGA AACAAAACCC AAAGGGGGAG AAAGATGTGG
  AGTAGGAGGA GAACAGAAGC TTATGCCGGG GAGTTTGAAA CAGCTCTTTC CTTCCCGTGC
  TCACAGATAC CAAGCTTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52437177	NES15406599	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49989038					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52437177	NES15406599	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56299858 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	170 bp upstream
Gm25917	predicted gene, 25917	629 bp upstream
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	458 bp distal
Rr267727	regulatory region 267727	within coordinates
Rr267728	regulatory region 267728	1143 bp proximal
Tssr113509	transcription start site region 113509	74 bp upstream
Tssr113510	transcription start site region 113510	115 bp upstream
Tssr113511	transcription start site region 113511	155 bp upstream
Tssr113512	transcription start site region 113512	177 bp upstream