rs49989220 SNP Detail

Summary

• ID
  rs49989220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:57167277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTGGTG CTGACCATCC
  GGGAAAAGAT CAACACCCCC ATCCGGGACA TGCCAAAGCC AGGAGATTGC CCAGCTGTTC
  TCTGGATCCT ACATTCATTA CTTCCACTGC CTGAGAATAG TAGACCTTCT TAAAGGAACC
  AAGGCTTCCA CCAAAAATAT TTTTGGCCGG TACTTTTCAC AGCGGATGAA GGATTCACAG
  R
  AGATCATAAA CCTGTACAAG AAGGACAGCA TGTATTTAGT AGACGTCTCT AGCCTATTTC
  AGAATGTCAA CCATGAGATC CCTCGCTAAA GAAGCAGATC CCCAAGTGCT GGCAATCGCA
  GCAAGATTAC AGCTGCAAGG AGTAGGGCCA GGCCCAGGCT GCTGAGATGT GGGAGCAGTT
  CTTCCTGCAA ACAGTATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52318250	NES15288225	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		G	G	G	G		A
ss323316471	CHEV_10_57010987	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49989220					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52318250	NES15288225	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:57167277 () rs orientation: forward

Symbol	Name	Function Class
Gm7001	predicted gene 7001	within coordinates
Gm66529	predicted gene, 66529	1221 bp upstream