rs49989646 SNP Detail

Summary

• ID
  rs49989646
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29579804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGTGACCA CTGTTGCCAC AGCCCGTGCC TTCTCTAACA
  GGACTGGGTA GAAGTATCTG AGAGGTAAAG GTCAGATGCC AAGAGGGCCG GGCAGTACTT
  M
  ACAGGCTCCT CCCACAGCAA GGAGAGTTTG ACAGGCTCCT CCCACAGTAG GGAGTGCTGG
  CCTCTCTTCC AAGCTACTGG GACCACTTCC TCTTTTTTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60557925	NES16578186	PERLEGEN	MM_PANEL2	f	SNP		A	A	A		C	C	C	C	C	C
ss145431539	ENSMUSSNP3283145	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49989646					SNP	A	A	A	A	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60557925	NES16578186	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29579804 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	74 bp upstream
Rr405148	regulatory region 405148	within coordinates
Tssr143531	transcription start site region 143531	79 bp upstream
Tssr143532	transcription start site region 143532	93 bp upstream
Tssr143533	transcription start site region 143533	126 bp upstream
Tssr143534	transcription start site region 143534	139 bp upstream