rs49989979 SNP Detail

Summary

• ID
  rs49989979
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:27029594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGAGCA AGTAGCAGTC
  CCCTGCATTT GCCCACCCAG AGCCCAGGGG CTCTGGTGGG ACATGTGTCA TGTCTCCCAC
  CTCTTTATTT CCCCAAATCT GGTACCCCAC AGTAAATTAC CTTTAACTCT TATGGCATTG
  CCATTAACAG TAAAAAGAAC TCAACCTTAT AATAGAGATG CCCAACGGCA AGATAGCATA
  K
  ATGAAAATAC AAGTTTCTAA AGGCTTGTCT CTTAATTCCT ACTTCTCCAA CTCTTAGGAA
  TGCACCACTT TTAAGGTTCT TGCTTTAGAA CAATAACATT CTTGGGGGAG GGGCAGAATT
  AACTTGCATA TAAATATAGA ATGATCTGCC TTTCTCTAGG AAAGTTTTCA TCCTCTGAAA
  ACAGGAAAGT GATCATTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63706543	NES17064451	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49989979					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63706543	NES17064451	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:27029594 () rs orientation: forward

Symbol	Name	Function Class
Rr391526	regulatory region 391526	1160 bp upstream