rs49990054 SNP Detail

Summary

• ID
  rs49990054
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148896553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGT GCCCCGCCTC CGTGCAGGAG
  M
  TCTGGGATTG GGCAGGCCCG CAGTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss144698614	ENSMUSSNP2107418	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321719778	CHEV_5_149771319	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49990054					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148896553 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Cpgi17084	CpG island 17084	27 bp distal
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	within coordinates
Gm52833	predicted gene, 52833	1179 bp downstream
Rr111639	regulatory region 111639	953 bp distal
Rr124806	regulatory region 124806	within coordinates
Rr378799	regulatory region 378799	1591 bp downstream
Rr378800	regulatory region 378800	within coordinates
Tssr49867	transcription start site region 49867	475 bp downstream
Tssr49868	transcription start site region 49868	403 bp downstream
Tssr49869	transcription start site region 49869	48 bp upstream
Tssr54596	transcription start site region 54596	434 bp upstream
Tssr54597	transcription start site region 54597	254 bp upstream
Tssr54598	transcription start site region 54598	169 bp upstream
Tssr54599	transcription start site region 54599	232 bp downstream