rs49990272 SNP Detail

Summary

• ID
  rs49990272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76847468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGCTTCC AAAGACTGTT
  CTTCCGGTTT CCTCAGTTTC CCTCTACTAT CTTTTTCTGC TCCAAGGTCC CACTCAGGGA
  ACACGTGGCA GGCAATCGAC ACGTCCTCAG GCCCTCCCTG GAGGCGATGG CTTCTCATTG
  ATGACCTTGA CTGTACTGTT CCAGAATGTT CTGCACTGAC ACATGCTGGC GTCCACTGTG
  Y
  CCTTCCGAGT CCTCTGGTGT CTTGGTTGTT GGGTAGAAAG ACCACACATG AGCACAATTT
  CATTGCATGT AAGAAAGCAC ATAGCCAGCC CAGCTCAGCA CTGGGCTATA GACCTGGCTC
  TGCTGCTGAA GGTGTTTCTA GGTGCCTCAG CCTCCCTACT CATGCTATTC TTAGCATCTT
  CTTTAGAAGA AAATGTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376414	NES15271936	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49990272					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376414	NES15271936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76847468 () rs orientation: forward

Symbol	Name	Function Class
Gm3137	predicted gene, 3137	within coordinates
Gm10787	predicted gene 10787	361 bp upstream
Rr434365	regulatory region 434365	665 bp proximal
Tssr94202	transcription start site region 94202	350 bp upstream