rs49990287 SNP Detail

Summary

• ID
  rs49990287
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118406342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CAGACTGATG AATTCTTGCA ATGAACATTT GCAAGCAAAG
  ACGTGTGGAC AAGAGGGTAC ACTGTGTGAC ACTGGGACAC ACTACAGCTT CTAAGAAGAG
  T
  TTTTTTTCTC TGCTGGGGGT GGGTCGAAAG GGTATAGGCT GGGTATGAGA GAGGAGGGGG
  ACACGAGTGG GACTGGGGTG CATAATGTGA AATTTACAAA G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149162361	ENSMUSSNP2566012	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49990287					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118406342 () rs orientation: forward

Symbol	Name	Function Class
Gm25076	predicted gene, 25076	1697 bp downstream
Gm73266	predicted gene, 73266	966 bp upstream
Rr618847	regulatory region 618847	1764 bp distal
Rr618848	regulatory region 618848	548 bp proximal
Rr618849	regulatory region 618849	917 bp proximal
Rr618850	regulatory region 618850	988 bp proximal