rs49991622 SNP Detail

Summary

• ID
  rs49991622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90694342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACCCACA TTACACATTT
  TTTTTTAAGT TCCTCTTTGC AATTTTAGCA GGAAAAAGCA AAAAGGCCAA GGACCGCATT
  AACTGCGCAG CTCAGGGAAA CACTGAGGCT CTTTTTCTTG CCCAGGCAAT CTGTGTGGGG
  AGAGCCTTGT AAAAATTCAT TTTCTTAGAT GGAAAACGCT TAGCATGAAA GGTGGAAGAC
  R
  GGATCTGTTC AGAGAGGAGG GTCATCAGTG GAAAGGGGCA GAATAAATCA TATATCAAAA
  AAAATTTTAA GTATGGTGTT TGGATGCATT GTGAGAGGAA ATTCACTAAC TAATAATACT
  AGTTAAGAGG TGAAATCCCC AAATGGGCAA AATAACCATA TTATTACCAG TTAAATATCT
  TATGAAAACA TTTTTTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss132592477	ENSMUSSNP7000834	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		G
ss323796874	CHEV_11_90664830	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49991622					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90694342 () rs orientation: forward

Symbol	Name	Function Class
4930405D11Rik	RIKEN cDNA 4930405D11 gene	1176 bp upstream
Rr237710	regulatory region 237710	1259 bp proximal
Rr253892	regulatory region 253892	318 bp distal
Tssr104130	transcription start site region 104130	1166 bp upstream