rs49992576 SNP Detail

Summary

• ID
  rs49992576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85387787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTAAATT CCTTACAGAG
  TTGCTGCGGT TGGGTTCCCA GCTCCCTTAT TCTCTGCTGC TCTCTGGGCA CAGGGGCCTG
  CCGCATCTCC TACCCCATGA GAGCTTCATC TCCCGTAGCT TTGACCTGTA GGCCAAAATG
  GTCCCAACTC CTAGACTTCT GTGTGAGGGC CTGTCCCTCC AGTCTCATTC CCTTCCTGTC
  Y
  AGTTACTGTG ACTGCAAGAT CCCGCCGCTT TGGAAATTAG GCGCCCCCAT CAAGCGGTCT
  GCGGGCGCCC TCTGCCGCCC GCTGTGAGAG AGGACATTCT GCATAGGCCT AGCCCTGCAC
  CCTTATTGGG TGTTTTCTTG AGTTCTGGCT GGAACAAAAC CTGGGAGCGC AGATATTTCC
  AAAACAAAAT AGTATGTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906782	NES15956943	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49992576					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906782	NES15956943	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85387787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17643	CpG island 17643	1363 bp distal
Rr633210	regulatory region 633210	1097 bp distal
Rr633211	regulatory region 633211	within coordinates
Rr633212	regulatory region 633212	62 bp proximal
Rr633213	regulatory region 633213	211 bp proximal
Rr633214	regulatory region 633214	389 bp proximal