rs49996369 SNP Detail

Summary

• ID
  rs49996369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122034931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGATGCAC CGGCGGAGGT GGCCAGGATG GGTCAAACCC
  AAGAGAAACC CAGATACTAG CTGTTAACAT CACAACCAGG CAGCAGCAGC GAATCAGGAA
  Y
  CTAAAAGAGA AATGTATTTC TAATAGGATT GTGTCACAAT GTCCGGGGAC ACCATTTGGG
  TGTCCTGAAT AATTTTTCAA ACCTGAGTTT GACAGCATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135737679	ENSMUSSNP5953304	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320909851	CHEV_3_121944200	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49996369					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122034931 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1822 bp upstream
Rr375675	regulatory region 375675	1478 bp upstream
Rr584261	regulatory region 584261	1460 bp proximal
Rr584262	regulatory region 584262	1833 bp proximal
Rr584263	regulatory region 584263	1916 bp proximal
Tssr31477	transcription start site region 31477	1821 bp upstream
Tssr35442	transcription start site region 35442	1479 bp upstream