rs49997832 SNP Detail

Summary

• ID
  rs49997832
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85384978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGTCTCTG TGTTTCTGTC
  CCAGCACAGC CTCTGCCGCC AGCTGAAGCT TCCCTTCCAG GAGCTCAGAG AAAGCAGGGG
  CTTGAGAGGA TGAGGAATCC TGGGTCCGGA AGTCTCATGA CAGCCTCCAG CTAGCTAAGA
  CCCAGAACTC TAAAGGAACC TTGCTCTAAA GGCTGCCAAC ATGAGGTTGC TATTCCTTTC
  R
  TAGAGAGATG GTTCATGTTT AAGTAACAGT GAACCCCGTT TGTGACCTTG GGAAAGGGCT
  CCTTGCTTTG CCCAGCTGTT GGCTAAGATT CTCAAACTGT TGACAGTAAA GATAGCTGGC
  TACCTTTCTG CATTCCTGTG GGCTAGACTT TCACCTTAAC TGTGGTAATC CTGTCATCTG
  CCCCTCGGGA ACCACCCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906795	NES15956981	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49997832					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906795	NES15956981	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85384978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17643	CpG island 17643	1108 bp proximal
Rr633210	regulatory region 633210	823 bp proximal