rs49998277 SNP Detail

Summary

• ID
  rs49998277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121324865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATATGT TATGAGCTAT
  GTCTCAGCAC TGGGACCCAG GCAAGTTAAC TCCTCTATAC TTTAGTTTTG TCATAGAGAA
  GGCAGGAGCT AATTATAGCA TCCTCTCAGG ATATTTGTGA ATGTAGCTGA CATTCACTTG
  TGCCCTGGCA CATACTCAAA GCTCAGCAAT GGATCTATCC ACCCACTAAT CTTCCTAGTC
  Y
  CTTTATAGTC AGCTGGGGAC ATTGCAGTAC AAGAGAGGGA CCAGCAGCTC ATGGTGGGAG
  CTGCCATCTG AGGCAACCTC TCCTAAAACA CTGAAGGGTT AGCACAGGCT GTCTCTTATA
  TCAGTCTGTG GATGTGTTCT TATATGTATG TGTGTGTGTG CCCATGCATC CATGAGCATA
  TATGTCTGCT GCTTTCCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132912432	ENSMUSSNP6568350	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49998277					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121324865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	768 bp proximal
Fn3k	fructosamine 3 kinase	914 bp upstream
Rr461974	regulatory region 461974	617 bp distal
Rr461975	regulatory region 461975	384 bp proximal
Tssr106404	transcription start site region 106404	909 bp upstream