rs49999648 SNP Detail

Summary

• ID
  rs49999648
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992524 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A ACCCCAAGAT GATTCTCCTG CTCCTGATGA TTGAAACCAG
  GATAAGTATA CCTTTATGGG CCATAGTAAG ATCATGGCCA GTACCTTTAC CGGTACATTC
  C
  AATTCTTCTA CCTAGCCTTT GTTTTTTGCA AAGGAATGTT TTTTGGATGT GCCTTATGCA
  CGACAAACTC CTCAAGAGCC ACGGGTGTAT AAGAGTACTA G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148802936	ENSMUSSNP3520265	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49999648					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992524 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2			Intron
				Noncoding-Transcript-Variant
Gm69636	predicted gene, 69636			within coordinates