rs49999797 SNP Detail

Summary

• ID
  rs49999797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51117234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT GGGGTTTTTT GTTGCTGCTG
  Y
  TAATTGAATG TTTTACTTTG CGATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135171975	ENSMUSSNP4030245	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320761982	CHEV_3_51013735	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49999797					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51117234 () rs orientation: forward

Symbol	Name	Function Class
Rr576241	regulatory region 576241	within coordinates
Tssr29031	transcription start site region 29031	474 bp upstream
Tssr29032	transcription start site region 29032	499 bp upstream
Tssr29033	transcription start site region 29033	539 bp upstream
Tssr29034	transcription start site region 29034	554 bp upstream
Tssr33189	transcription start site region 33189	367 bp downstream
Tssr33190	transcription start site region 33190	1676 bp downstream
Tssr33191	transcription start site region 33191	1746 bp downstream